Converts an Illumina export.txt file to a FASTQ formatted file.
This mainly consists of converting the quality scores to Phred format.
In addtion, this can also remove reads which have failed the QC filter and
trim away sequence that have a trailing 'B' for quality (Read Segment Quality
Control Indicator).
Based on: http://www.cassj.co.uk/blog/?p=490
http://en.wikipedia.org/wiki/FASTQ_format
Usage: fastqutils fromqseq {opts} export.txt
Options:
-solexa file is pre-1.3 format (uses Solexa calculation for quality)
-tag tag Prefix the read names with this tag (such as the sample name)
-trim perform quality control indicator (trailing B) trimming
-min N the minimum allowed length for a read, post B-trimming
-noqc Don't remove reads that failed QC (for matching paired end data)