Postprocesses a BAM file to remove all clipping from reads and alignments.

Hard clipping is removed from the alignment. Soft clipping is removed from
the alignment and the sequence. The number of soft clipped bases is added as
the 'ZA:i' (5' clipping) and 'ZB:i' (3' clipping) tags. The percentage of soft
clipped bases is given in the 'ZC:f' tag.

Usage: bamutils removeclipping {-f} inbamfile outbamfile

Options:
  -f     Force overwriting an existing outfile